Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
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Updated
Feb 7, 2023 - Python
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Interactive R package to quantify, analyse and visualise alternative splicing
Workshop • Analysis of RNA-seq data
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
ASAP : Automated Single-cell Analysis Pipeline
Gene-level general linear mixed model
Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
📊 An R package of RNA-seq workflow
An application for exploring and visualizing differential gene expression data created with DESeq2
Code and figures for the Differential Causal Inference (DCI) algorithm
Scripts to run differential expression analysis using DESeq2 package
🍊 View the gene expression response to TNF and IL-17A with vanilla Javascript and HTML.
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
Comparison of gene usage in immune repertoires under different biological conditions
Python framework for explainable omics analysis
Viper is a Snakemake workflow, aimed at performing the RNA-seq workflow of the paper 'Causes and consequences of a glutamine induced normoxic HIF1 activity for the tumor metabolism', Kappler et al. (2019) in a reproducible and automated manner
RNA-seq alignment and analysis pipeline
Temporal Integrative Genomics Analysis in R
These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
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